Yeah it's the bigger overlap with the 469 that causes lower and a bit unstable vacuum at idle, which then confuses the ECU. And other parts of the airpump that is the engine also affect to it of course. Like the head. And apparently the fuel too... I ran my car on gasoline for couple of tank fulls during the summer, and couldn't get it to idle as good as it does on E85. That could be down to the 960cc injectors too, they're not opening much at idle with gasoline. Cold start roughness wasn't as bad as it is with E85, but still there.
The bigger issue with the 469 is the occasional bogging down when starting from standstill. Rare, but annoying.